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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. CDX2, caudal type homeobox 2
Sequence ID:NM_001265
Entrez Gene ID:1045
Ensembl ID:ENSG00000165556

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:13q12.3Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:13: 28536277 - 28543317

NM_001265 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
212292853627828537505
123013752853900628539151
137620902854260228543316

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
4867859Full LengthBC014461caudal type homeobox 2

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_001256  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001265 NP_001256 Q99626 Homeobox
Caudal_act

Related Sequences

 
mRNAGenPeptSwissProt
U51096 AAB40603 Q99626
BC014461 AAH14461 Q99626
DQ893626 ABM84552  
EU176674 ABW03475  
Y13709 CAA74038 Q99626

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens CDX2 NP_001256 R.norvegicus Cdx2 66019   NP_076453 96
M.musculus Cdx2 12591 Gene Info NP_031699 94
A.gambiae AgaP_AGAP009646 1279024   XP_318681 48
D.melanogaster cad 35341   NP_599128 47

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)