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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. EDF1, endothelial differentiation-related factor 1
Sequence ID:NM_003792
NM_153200
RefSeqGene ID:NG_029208
Entrez Gene ID:8721
Ensembl ID:ENSG00000107223

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, stem cell, stomach, synovium, t-cell, testis, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:9q34.3Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:9: 139756584 - 139760738

 Exon Info From UCSC:
NM_003792
NM_153200

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3903539Full LengthBC015500endothelial differentiation-related factor 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_694880  NP_003783  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_003792 NP_003783 O60869 HTH_3
MBF1
NM_153200 NP_694880   HTH_3
MBF1

Related Sequences

 
mRNAGenPeptSwissProt
BC015500 AAH15500 O60869
BT009863 AAP88865 O60869
DQ891577 ABM82503  
DQ894770 ABM85696  
AB002282 BAA88073 O60869
AB002283 BAA88074 O60869
CR541914 CAG46712 O60869

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens EDF1 NP_003783 M.musculus Edf1 59022 Gene Info NP_067494 99
R.norvegicus Edf1 296570   NP_001100027 99
A.gambiae AgaP_AGAP004990 1275816   XP_315094 66
D.melanogaster mbf1 39842   NP_524110 66
A.thaliana MBF1B 825037   NP_191427 56
C.elegans mbf-1 178071   NP_502166 56
A.thaliana MBF1A 818868   NP_565981 55
S.pombe SPBC83.17 2541192   NP_595650 51
S.cerevisiae MBF1 854474   NP_014942 47

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)