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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Hs. SLC8A2, solute carrier family 8 (sodium/calcium exchanger), member 2
Sequence ID:NM_015063
Entrez Gene ID:6543
Ensembl ID:ENSG00000118160

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:19q13.3Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:19: 47931922 - 47975122

NM_015063 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
224444793127947933721
244527234793542347935701
272428234794071847940817
282429484794110547941229
294929664794442547944442
296730704794459347944696
307134934795106547951487
349441584796018647960850
415948494796898547969675
485051114797504547975306

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
100068228Full LengthBC167838solute carrier family 8 (sodium/calcium exchanger), member 2

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_055878  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_015063 NP_055878 Q9UPR5 Na_Ca_ex
Calx-beta

Related Sequences

 
mRNAGenPeptSwissProt
BC167838 AAI67838  
AB029010 BAA83039 Q9UPR5
AK293457 BAG56952 B4DE41
AK293836 BAG57237 B4DEX6
AK293860 BAG57255 B4DEZ4
AK302552 BAG63821 Q9UPR5
AL512764 CAC21681 Q9H021

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens SLC8A2 NP_055878 R.norvegicus Slc8a2 140447   NP_511174 97
M.musculus Slc8a2 110891 Gene Info NP_683748 94

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)