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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. CSTF1, cleavage stimulation factor, 3' pre-RNA, subunit 1, 50kDa
Sequence ID:NM_001033521
NM_001033522
NM_001324
Entrez Gene ID:1477
Ensembl ID:ENSG00000101138

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:20q13.2Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:20: 54967700 - 54979193

 Exon Info From UCSC:
NM_001033521
NM_001033522
NM_001324

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
2964685Full LengthBC001011cleavage stimulation factor, 3' pre-RNA, subunit 1, 50kDa
2964685Full LengthBC007425cleavage stimulation factor, 3' pre-RNA, subunit 1, 50kDa

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_001315  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001033521 NP_001028693 Q05048  
NM_001033522 NP_001028694 Q05048  
NM_001324 NP_001315 Q05048 WD40

Related Sequences

 
mRNAGenPeptSwissProt
L02547 AAA35691 Q05048
BC001011 AAH01011 Q05048
BC007425 AAH07425 Q05048
BT007138 AAP35802 Q05048
DQ892707 ABM83633  
DQ892717 ABM83643  
DQ895959 ABM86885  
AK312774 BAG35638 Q05048
AK293182 BAG56724 B4DDG3

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens CSTF1 NP_001028693 R.norvegicus Cstf1 311670   NP_001013179 100
M.musculus Cstf1 67337 Gene Info NP_077161 100
A.gambiae AgaP_AGAP002776 1273194   XP_312148 58
D.melanogaster CstF-50 43734   NP_651883 57
C.elegans cpf-1 174378   NP_495822 53
A.thaliana AT5G60940 836215   NP_200902 39

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)

BioCarta Pathways
Pathway information courtesy of BioCarta