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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. SLC12A7, Solute carrier family 12 (potassium/chloride transporters), member 7
Sequence ID:NM_006598
Entrez Gene ID:10723
Ensembl ID:ENSG00000113504

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, brain, cartilage, cerebrum, cervix, colon, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, peripheral nervous system, pituitary gland, placenta, pooled tissue, prostate, retina, skin, soft tissue, spleen, stem cell, stomach, synovium, testis, thymus, thyroid, uncharacterized tissue, uterus
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:5p15Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:5: 1050498 - 1112109

 Exon Info From UCSC:
NM_006598

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
5265743Full LengthBC098390solute carrier family 12 (potassium/chloride transporters), member 7

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_006589  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_006598 NP_006589 Q9Y666 AA_permease

Related Sequences

 
mRNAGenPeptSwissProt
AF105365 AAD39741 Q9Y666
BC007760 AAH07760 Q9Y666
BC098390 AAH98390 Q9Y666
AK024493 BAB15783 Q9Y666
AK024497 BAB15787 Q9Y666
AK302856 BAG64042 B4DZD0
AL117433 CAB55921 Q9Y666

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens SLC12A7 NP_006589 M.musculus Slc12a7 20499 Gene Info NP_035520 91
R.norvegicus Slc12a7 308069   XP_001071999 91

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)