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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. SCAF4, SR-related CTD-associated factor 4
Sequence ID:NM_001145444
NM_001145445
NM_020706
Entrez Gene ID:57466
Ensembl ID:ENSG00000156304

Database Links

UniGeneEntrez GeneEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:21q22.1Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:21: 33043348 - 33074102

 Exon Info From UCSC:
NM_001145444
NM_001145445
NM_020706

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3907610Full LengthBC014921splicing factor, arginine/serine-rich 15
5432277Full LengthBC064990splicing factor, arginine/serine-rich 15
5442227Full LengthBC052286splicing factor, arginine/serine-rich 15
6019414Full LengthBC043353splicing factor, arginine/serine-rich 15

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_065757  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001145444 NP_001138916    
NM_001145445 NP_001138917    
NM_020706 NP_065757 O95104 RRM_1

Related Sequences

 
mRNAGenPeptSwissProt
AF023142 AAD09327 O95104
BC014921 AAH14921 O95104
BC043353 AAH43353 Q0P607
BC052286 AAH52286 O95104
BC064990 AAH64990 O95104
AB032998 BAA86486 O95104
AL117417 CAB55911 O95104
AL834304 CAD38974 O95104

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens SCAF4 NP_065757 M.musculus Scaf4 224432 Gene Info NP_849254 83
R.norvegicus Scaf4 245924   NP_001032424 82
D.melanogaster CG4266 37411   NP_001097394 43
A.gambiae AgaP_AGAP003369 1275046   XP_314272 42
C.elegans nrd-1 172064   NP_491403 35

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)