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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. PIFO, Primary cilia formation
Sequence ID:NM_181643
Entrez Gene ID:128344
Ensembl ID:ENSG00000173947

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:1p13.2Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:1: 111889247 - 111895635

NM_181643 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
199111889194111889292
100239111889531111889670
240338111890295111890393
339469111891137111891267
470587111892727111892844
5882346111893880111895638

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
4837146Full LengthBC050319chromosome 1 open reading frame 88
7939736Full LengthBC093891chromosome 1 open reading frame 88
8069007Full LengthBC101501chromosome 1 open reading frame 88
5172399IncompleteBC029237chromosome 1 open reading frame 88
5285151IncompleteBC068603chromosome 1 open reading frame 88

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_181643 NP_857594 Q8TCI5  

Related Sequences

 
mRNAGenPeptSwissProt
BC029237 AAH29237 Q8TCI5
BC050319 AAH50319 Q8TCI5
BC093891 AAH93891 Q8TCI5
BC101501 AAI01502 Q8TCI5
HM237139 ADI86276 Q8TCI5
HM237140 ADI86277 Q8TCI5
AK074433 BAB85081 Q8TCI5
AK303897 BAG64829 Q8TCI5

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens C1orf88 NP_857594 M.musculus 1700027A23Rik 100503311 Gene Info XP_003084584 70
R.norvegicus LOC691223 691223   XP_001077265 69

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)