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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. CARTPT, CART prepropeptide
Sequence ID:NM_004291
RefSeqGene ID:NG_015988
Entrez Gene ID:9607
Ensembl ID:ENSG00000164326

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Associated Diseases (from OMIM)

DiseaseOther Genes
OBESITYADRB2
ADRB3
AGRP
ENPP1
FTO
GHRL
MC3R
MC4R
NR0B2
POMC
PPARG
PPARGC1B
PYY
SDC3
SIM1
UCP1
UCP2
UCP3
UCP3

Cytogenetic Location (from UniGene)

Cytogenetic Location:5q13.2Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:5: 71014993 - 71016605

NM_004291 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
12907101498971015278
2913747101570671015789
3759157101633471016874

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
5171665Full LengthBC029882CART prepropeptide

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_004282  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_004291 NP_004282 Q16568 CART

Related Sequences

 
mRNAGenPeptSwissProt
U16826 AAB08010 Q16568
BC029882 AAH29882 Q16568
EU831877 ACE86636  
EU831800 ACE87318  
CR542216 CAG47012 Q16568

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens CARTPT NP_004282 M.musculus Cartpt 27220 Gene Info NP_038760 97
R.norvegicus Cartpt 29131   NP_058806 95

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)