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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Hs. SDR16C5, short chain dehydrogenase/reductase family 16C, member 5
Sequence ID:NM_138969
Entrez Gene ID:195814
Ensembl ID:ENSG00000170786

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:8q12.1Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:8: 57213780 - 57233241

NM_138969 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
315655721256957214131
156616915721815557218280
169218365721923457219378
183719365722148657221585
193720685722471557224846
206924155722857357228919
241630395723261757233240

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
5181472Full LengthBC037219short chain dehydrogenase/reductase family 16C, member 5
5752917Full LengthBC064525short chain dehydrogenase/reductase family 16C, member 5

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_620419  

Protein Infomation

RefSeq
mRNAProteinSwissProtEnzymePfam
NM_138969 NP_620419 Q8N3Y7 EC 1.1.1.105 adh_short

Related Sequences

 
mRNAGenPeptSwissProtEnzyme
BC037219 AAH37219 Q8N3Y7 EC 1.1.1.105
BC064525 AAH64525 Q8N3Y7 EC 1.1.1.105
AY444559 AAS68535 Q8N3Y7 EC 1.1.1.105
AK057667 BAB71545 Q8N3Y7 EC 1.1.1.105
AB083038 BAB91014 Q8N3Y7 EC 1.1.1.105
AK095159 BAG52996 B3KT84  
AK294634 BAG57813 Q8N3Y7 EC 1.1.1.105

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens SDR16C5 NP_620419 R.norvegicus Sdr16c5 297805   NP_001100104 82
M.musculus Sdr16c5 242285 Gene Info NP_871789 80
C.elegans dhs-19 179578   NP_505915 53
C.elegans dhs-3 172603   NP_001122508 52
A.gambiae AgaP_AGAP008125 1277830   XP_317334 46
D.melanogaster CG15629 33679   NP_608859 40
N.crassa NCU06845 3879468   XP_963319 35
S.cerevisiae YDL114W 851444   NP_010169 31
A.thaliana HSD6 835149   NP_199890 29

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)