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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. IRF9, interferon regulatory factor 9
Sequence ID:NM_006084
Entrez Gene ID:10379
Ensembl ID:ENSG00000213928

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, brain, cartilage, cerebellum, cerebrum, cervix, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, peripheral nervous system, pineal gland, placenta, pooled tissue, prostate, salivary gland, skin, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:14q11.2Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:14: 24630528 - 24635463

NM_006084 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
11262463042124630546
1273072463135224631532
3084912463217424632357
4926222463258624632716
6237042463308624633167
7057762463327124633342
77711182463382224634163
111912342463505524635170
123516762463533024635771

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
5588434Full LengthBC035716interferon regulatory factor 9

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_006075  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_006084 NP_006075 Q00978 IRF

Related Sequences

 
mRNAGenPeptSwissProt
M87503 AAA58687 Q00978
BC035716 AAH35716 Q00978
EU446692 ABZ92221  
AK295467 BAG58398 B4DI86

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens IRF9 NP_006075 R.norvegicus Irf9 305896   NP_001012041 73
M.musculus Irf9 16391 Gene Info NP_001152889 71

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)

BioCarta Pathways
Pathway information courtesy of BioCarta