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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. NFIC, Nuclear factor I/C (CCAAT-binding transcription factor)
Sequence ID:NM_205843
NM_001245002
NM_001245005
NM_001245004
NM_005597
RefSeqGene ID:NG_030333
Entrez Gene ID:4782
Ensembl ID:ENSG00000141905

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, peripheral nervous system, placenta, pooled tissue, prostate, retina, salivary gland, skin, soft tissue, spleen, stem cell, stomach, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:19p13.3Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:19: 3463602 - 3465428

 Exon Info From UCSC:
NM_205843
NM_005597

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
4554661Full LengthBC012120nuclear factor I/C (CCAAT-binding transcription factor)

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_005588  NP_995315  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001245002 NP_001231931 P08651  
NM_001245004 NP_001231933    
NM_001245005 NP_001231934    
NM_005597 NP_005588   CTF_NFI
MH1
NM_205843 NP_995315   CTF_NFI
MH1

Related Sequences

 
mRNAGenPeptSwissProt
BC012120 AAH12120 P08651
DQ893655 ABM84581  
DQ895795 ABM86721  
AK129956 BAC85258 Q6ZP66
AK289885 BAF82574 P08651
AK297825 BAH12672 B7Z4T6
AK297867 BAH12681 B7Z4U5
AK304816 BAH14259 P08651
X12492 CAA31012 P08651
X92857 CAA63440 P08651
CR536507 CAG38745 Q6FI30

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens NFIC NP_995315 R.norvegicus Nfic 29228   NP_113755 97
M.musculus Nfic 18029 Gene Info NP_032714 96
A.gambiae NFI 1272205   XP_311086 69

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)