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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. SMAD5, SMAD family member 5
Sequence ID:NM_001001419
NM_001001420
NM_005903
RefSeqGene ID:NG_032037
Entrez Gene ID:4090
Ensembl ID:ENSG00000113658

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, ear, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, pituitary gland, placenta, pooled tissue, prostate, retina, skin, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:5q31Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:5: 135489435 - 135513244

 Exon Info From UCSC:
NM_001001419
NM_001001420
NM_005903

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3906006Full LengthBC009682SMAD family member 5

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_005894  NP_001001419  NP_001001420  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001001419 NP_001001419 Q99717
Q68DB7
MH1
MH2
NM_001001420 NP_001001420 Q99717
Q68DB7
MH1
MH2
NM_005903 NP_005894 Q99717
Q68DB7
MH1
MH2

Related Sequences

 
mRNAGenPeptSwissProt
AF010601 AAB66353 Q99717
Q68DB7
AF009678 AAB72180 Q99717
Q68DB7
U73825 AAB95090 Q99717
Q68DB7
U59913 AAC50791 Q99717
AF071106 AAD20799  
AF071107 AAD20800  
AF071108 AAD20801  
AF071109 AAD20802  
AF071110 AAD20803  
BC009682 AAH09682 Q99717
Q68DB7
HQ448272 ADQ32752  
AK313397 BAG36195 Q68DB7
CR457424 CAG33705 Q6I9T1
CR749366 CAH18219 Q99717
Q68DB7
CR749473 CAH18303 Q99717
Q68DB7

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens SMAD5 NP_001001419 R.norvegicus Smad5 59328   NP_067724 100
M.musculus Smad5 17129 Gene Info NP_032567 99

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)

BioCarta Pathways
Pathway information courtesy of BioCarta