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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. SEC13, SEC13 homolog (S. cerevisiae)
Sequence ID:NM_001136232
NM_183352
NR_024272
NR_024273
NM_001136026
NM_030673
Entrez Gene ID:6396
Ensembl ID:ENSG00000157020

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, peripheral nervous system, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, soft tissue, spleen, stem cell, stomach, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:3p25-p24Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:3: 10342614 - 10362725

 Exon Info From UCSC:
NM_001136232
NM_183352

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3605545Full LengthBC002634SEC13 homolog (S. cerevisiae)
30408210Full LengthBC091506SEC13 homolog (S. cerevisiae)
3959959IncompleteBC006167SEC13 homolog (S. cerevisiae)

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_899195  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001136232 NP_001129704    
NM_183352 NP_899195 P55735 WD40

Related Sequences

 
mRNAGenPeptSwissProt
BC002634 AAH02634 P55735
BC006167 AAH06167 P55735
BC091506 AAH91506 P55735
EF036494 ABO65080 A4UCS7
AB209554 BAD92791 Q59FA6
AK223019 BAD96739 Q53GB2
AK294662 BAG57832 A8MWR8
AK301999 BAG63403 B4DXJ1

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens SEC13 NP_899195 M.musculus Sec13 110379 Gene Info NP_077168 97
R.norvegicus Sec13 297522   NP_001006979 97
A.gambiae AgaP_AGAP003183 1273855   XP_312881 67
D.melanogaster sec13 44437   NP_651977 60
A.thaliana AT2G30050 817556   NP_180566 56
A.thaliana AT3G01340 821216   NP_001030616 54
S.cerevisiae SEC13 850905   NP_013309 53
S.pombe sec13 2540716   NP_596692 51
N.crassa NCU04063 3873801   XP_957678 51
C.elegans npp-20 176957   NP_500086 44
P.falciparum PFL1480w 811348   XP_001350702 40

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)