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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. CLCN5, Chloride channel, voltage-sensitive 5
Sequence ID:NM_001127899
NM_001127898
NM_000084
RefSeqGene ID:NG_007159
Entrez Gene ID:1184
Ensembl ID:ENSG00000171365

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data


Associated Diseases (from OMIM)

DiseaseOther Genes
DENT DISEASEOCRL
HYPOPHOSPHATEMIC RICKETS 
NEPHROLITHIASIS, TYPE I 
PROTEINURIA, LOW MOLECULAR WEIGHT, WITH HYPERCALCIURIC NEPHROCALCINOSIS 

Cytogenetic Location (from UniGene)

Cytogenetic Location:Xp11.23-p11.22Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:X: 49857619 - 49863886

 Exon Info From UCSC:
NM_001127899
NM_001127898
NM_000084

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
40146460Full LengthBC130429chloride channel 5
40146462Full LengthBC130431chloride channel 5

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_000075  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_000084 NP_000075 P51795 CBS
Voltage_CLC
NM_001127898 NP_001121370    
NM_001127899 NP_001121371    

Related Sequences

 
mRNAGenPeptSwissProt
BC130429 AAI30430 P51795
BC130431 AAI30432 P51795
HQ258649 ADR83400  
AK290940 BAF83629 A8K4H5
AK056560 BAG51748 P51795
AK092049 BAG52474 B3KRR2
X81836 CAA57430 P51795
X91906 CAA63000 P51795
BK000969 DAA01544 P51795

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens CLCN5 NP_001121370 R.norvegicus Clcn5 25749   NP_058802 98
M.musculus Clcn5 12728 Gene Info NP_057900 98
N.crassa NCU06624 3878514   XP_962366 43
S.cerevisiae GEF1 853497   NP_012574 36
S.pombe SPBC19C7.11 2540750   NP_596167 35

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)