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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. CHRD, chordin
Sequence ID:NM_003741
NM_177978
NM_177979
RefSeqGene ID:NG_029559
Entrez Gene ID:8646
Ensembl ID:ENSG00000090539

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:3q27Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:3: 184102858 - 184107617


Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
40008417Full LengthBC112345chordin
5175884IncompleteBC029879chordin

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_003732  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_003741 NP_003732 Q9H2X0 VWC
CHRD

Related Sequences

 
mRNAGenPeptSwissProt
AF076612 AAC69835 Q9H2X0
AF209928 AAG35767 Q9H2X0
AF209929 AAG35768 Q9H2X0
AF209930 AAG35769 Q9H2X0
AF283325 AAG35784 Q9H2X0
BC029879 AAH29879 Q8N2W7
BC112345 AAI12346 Q9H2X0
AY358926 AAQ89285 Q9H2X0
AK074147 BAB84973 Q8TEH7
AB208947 BAD92184 Q59H12
AK293456 BAH11513 B7Z1H7
AK295632 BAH12133 B7Z397
AK296316 BAH12312 B7Z3S6
AK300213 BAH13240 B7Z6F4
AK300476 BAH13292 B7Z6K6

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens CHRD NP_003732 M.musculus Chrd 12667 Gene Info NP_034023 87
R.norvegicus Chrd 117275   NP_476475 87
A.gambiae AgaP_AGAP000472 1271767   XP_310620 36
D.melanogaster sog 32498   NP_476736 32

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)

BioCarta Pathways
Pathway information courtesy of BioCarta