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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. CTNND1, Catenin (cadherin-associated protein), delta 1
Sequence ID:NM_001085458
NM_001085459
NM_001331
NM_001206885
NM_001085461
NM_001085460
NM_001206891
NM_001206889
NM_001085462
NM_001206883
NM_001206886
NM_001206887
NM_001206884
NM_001206888
NM_001085463
NM_001085464
NM_001085467
NM_001085465
NM_001206890
NM_001085466
NM_001085468
NM_001085469
RefSeqGene ID:NG_029078
Entrez Gene ID:1500
Ensembl ID:ENSG00000198561

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, ear, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, peripheral nervous system, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, soft tissue, spleen, stem cell, stomach, synovium, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:11q11Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:11: 57529268 - 57586650

 Exon Info From UCSC:
NM_001085458
NM_001085459
NM_001331
NM_001085461
NM_001085460
NM_001085462
NM_001085463
NM_001085464
NM_001085467
NM_001085465
NM_001085466
NM_001085468
NM_001085469

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
5269008Full LengthBC075795catenin (cadherin-associated protein), delta 1
3450203IncompleteBC010501catenin (cadherin-associated protein), delta 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_001322  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001085458 NP_001078927 O60716  
NM_001085459 NP_001078928    
NM_001085460 NP_001078929    
NM_001085461 NP_001078930    
NM_001085462 NP_001078931    
NM_001085463 NP_001078932    
NM_001085464 NP_001078933    
NM_001085465 NP_001078934    
NM_001085466 NP_001078935    
NM_001085467 NP_001078936    
NM_001085468 NP_001078937    
NM_001085469 NP_001078938    
NM_001206883 NP_001193812    
NM_001206884 NP_001193813    
NM_001206885 NP_001193814    
NM_001206886 NP_001193815    
NM_001206887 NP_001193816    
NM_001206888 NP_001193817    
NM_001206889 NP_001193818    
NM_001206890 NP_001193819    
NM_001206891 NP_001193820    
NM_001331 NP_001322   Arm
HEAT

Related Sequences

 
mRNAGenPeptSwissProt
AF062317 AAC39802 O60716
AF062318 AAC39803 O60716
AF062319 AAC39804 O60716
AF062320 AAC39805 O60716
AF062321 AAC39806 O60716
AF062322 AAC39807 O60716
AF062323 AAC39808 O60716
AF062324 AAC39809 O60716
AF062325 AAC39810 O60716
AF062326 AAC39811 O60716
AF062327 AAC39812 O60716
AF062328 AAC39813 O60716
AF062329 AAC39814 O60716
AF062330 AAC39815 O60716
AF062331 AAC39816 O60716
AF062332 AAC39817 O60716
AF062333 AAC39818 O60716
AF062334 AAC39819 O60716
AF062335 AAC39820 O60716
AF062336 AAC39821 O60716
AF062337 AAC39822 O60716
AF062338 AAC39823 O60716
AF062339 AAC39824 O60716
AF062340 AAC39825 O60716
AF062341 AAC39826 O60716
AF062342 AAC39827 O60716
AF062343 AAC39828 O60716
AF062344 AAC39829 O60716
BC010501 AAH10501 Q96FS1
BC075795 AAH75795 O60716
BT007333 AAP35997 Q7KZJ3
AB002382 BAA20838 O60716
AK292554 BAF85243 O60716
CR749275 CAH18130 Q68DU0

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens CTNND1 NP_001078927 M.musculus Ctnnd1 12388 Gene Info NP_031641 98
R.norvegicus Ctnnd1 311163   NP_001101210 98

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)