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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. CDHR5, cadherin-related family member 5
Sequence ID:NM_001171968
NM_021924
NM_031264
NM_017717
NM_031265
Entrez Gene ID:53841
Ensembl ID:ENSG00000099834

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer Aberrations

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:11p15.5Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:11: 616585 - 626078

 Exon Info From UCSC:
NM_001171968
NM_021924
NM_031264

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
5185584Full LengthBC038405mucin-like protocadherin

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_112554  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001171968 NP_001165439    
NM_021924 NP_068743 Q9HBB8  
NM_031264 NP_112554   Cadherin

Related Sequences

 
mRNAGenPeptSwissProt
AF258675 AAG16732 Q9HBB8
AF258676 AAG16733 Q9HBB8
AF276242 AAG30821 Q9HBB8
AF301909 AAG33495 Q9HBB8
BC038405 AAH38405 Q58EZ6
AY358368 AAQ88734 Q9HBB8
AK000226 BAA91021 Q9HBB8
AK000384 BAA91130 Q9HBB8
AK025012 BAB15052 Q9HBB8
AK300991 BAG62610 B4DV98

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens CDHR5 NP_001165439 R.norvegicus Mucdhl 171554   NP_612534 65
M.musculus Cdhr5 72040 Gene Info NP_001107794 64

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)