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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Hs. VAPA, VAMP (vesicle-associated membrane protein)-associated protein A, 33kDa
Sequence ID:NM_003574
NM_194434
Entrez Gene ID:9218
Ensembl ID:ENSG00000101558

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, ear, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, peripheral nervous system, pineal gland, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, soft tissue, spleen, stem cell, stomach, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:18p11.22Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:18: 9914250 - 9954823

 Exon Info From UCSC:
NM_003574
NM_194434

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
2822547Full LengthBC002992VAMP (vesicle-associated membrane protein)-associated protein A, 33kDa
5285417IncompleteBC033947VAMP (vesicle-associated membrane protein)-associated protein A, 33kDa
5314967IncompleteBC042860VAMP (vesicle-associated membrane protein)-associated protein A, 33kDa

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_919415  NP_003565  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_003574 NP_003565   Motile_Sperm
NM_194434 NP_919415 Q9P0L0 Motile_Sperm

Related Sequences

 
mRNAGenPeptSwissProt
AF057358 AAC26508 Q9P0L0
AF044670 AAD09742 Q9P0L0
AF086627 AAD13576 Q9P0L0
AF154847 AAF72105 Q9P0L0
BC002992 AAH02992 Q9P0L0
BT019618 AAV38424 Q9P0L0
AK292948 BAF85637 A8KA83
AK315577 BAG37951 A8KA83

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens VAPA NP_003565 M.musculus Vapa 30960 Gene Info NP_038961 97
R.norvegicus Vapa 58857   NP_113819 97

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)