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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. BARX1, BARX homeobox 1
Sequence ID:NM_021570
Entrez Gene ID:56033
Ensembl ID:ENSG00000131668

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:9q12Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:9: 96713908 - 96717602

NM_021570 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
197189671391096714609
7198039671501096715094
80410959671517796715468
109614989671720596717607

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
5555949Full LengthBC064363BARX homeobox 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_067545  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_021570 NP_067545 Q9HBU1 Homeobox

Related Sequences

 
mRNAGenPeptSwissProt
AF213356 AAG23738 Q9HBU1
BC009458 AAH09458 Q9HBU1
BC064363 AAH64363 Q9HBU1
JF432442 ADZ15659  

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens BARX1 NP_067545 M.musculus Barx1 12022 Gene Info NP_031552 96
R.norvegicus Barx1 364680   NP_001102350 96

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)