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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. PODXL, podocalyxin-like
Sequence ID:NM_001018111
NM_005397
Entrez Gene ID:5420
Ensembl ID:ENSG00000128567

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    bone, brain, cartilage, cerebellum, cerebrum, cervix, colon, ear, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, peripheral nervous system, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, soft tissue, stem cell, stomach, synovium, testis, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:7q32-q33Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:7: 131188800 - 131241376

 Exon Info From UCSC:
NM_001018111
NM_005397

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
7939575Full LengthBC093730podocalyxin-like
8327503Full LengthBC112035podocalyxin-like
9051823Full LengthBC143318podocalyxin-like
5172924IncompleteBC042466podocalyxin-like

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_001018121  NP_005388  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001018111 NP_001018121 O00592 CD34_antigen
NM_005397 NP_005388   CD34_antigen

Related Sequences

 
mRNAGenPeptSwissProt
U97519 AAB61574 O00592
BC093730 AAH93730 O00592
BC112035 AAI12036 O00592
BC143318 AAI43319 B7ZKQ8
AK055816 BAB71022 Q96N83
AK223573 BAD97293 O00592

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens PODXL NP_001018121 M.musculus Podxl 27205 Gene Info NP_038751 52
R.norvegicus Podxl 192181   NP_620203 51

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)