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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. ATMIN, ATM interactor
Sequence ID:NM_015251
Entrez Gene ID:23300
Ensembl ID:ENSG00000166454

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, ear, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, peripheral nervous system, pituitary gland, placenta, pooled tissue, prostate, retina, skin, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:16q23.2Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:16: 81078247 - 81080963

NM_015251 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
13548106945781069810
3554808107496081075085
4816808107588581076084
68148668107676581080950

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3612984IncompleteBC002701ATM interactor

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_056066  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_015251 NP_056066 O43313 zf-C2H2

Related Sequences

 
mRNAGenPeptSwissProt
BC002701 AAH02701 O43313
AB007891 BAA24861 O43313
AK290943 BAF83632 O43313
AK301781 BAH13552 B7Z7B6
AK302556 BAH13741 B7Z7V5
CR749457 CAH18291 O43313

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens ATMIN NP_056066 R.norvegicus Atmin 315037   XP_235378 81
M.musculus Atmin 234776 Gene Info NP_808368 80

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)