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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.

Gene Info

Gene Information For:Hs. FOXA1, forkhead box A1
Sequence ID:NM_004496
Entrez Gene ID:3169
Ensembl ID:ENSG00000129514

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

Cytogenetic Location (from UniGene)

Cytogenetic Location:14q12-q13Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:14: 38060297 - 38063467

NM_004496 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
5269380Full LengthBC033890forkhead box A1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_004487  

Protein Infomation

NM_004496 NP_004487 P55317 Fork_head

Related Sequences

U39840 AAB06493 P55317
BC033890 AAH33890 P55317
AK313785 BAG36523 P55317
AM392863 CAL37741 P55317
AM393239 CAL38117  
AM393310 CAL38188  
AM393369 CAL38247  

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene Info Protein
H.sapiens FOXA1 NP_004487 M.musculus Foxa1 15375 Gene Info NP_032285 96
R.norvegicus Foxa1 25098   NP_036874 93

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)