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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.

Gene Info

Gene Information For:Hs. PACSIN2, Protein kinase C and casein kinase substrate in neurons 2
Sequence ID:NM_001184970
Entrez Gene ID:11252
Ensembl ID:ENSG00000100266

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cartilage, cerebrum, cervix, colon, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, peripheral nervous system, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, soft tissue, stem cell, stomach, t-cell, testis, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:22q13.2-q13.33Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:22: 43265776 - 43411151

 Exon Info From UCSC:

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
2967052Full LengthBC008037protein kinase C and casein kinase substrate in neurons 2

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_009160  

Protein Infomation

NM_001184970 NP_001171899    
NM_001184971 NP_001171900    
NM_007229 NP_009160 Q9UNF0 SH3_1

Related Sequences

AF128536 AAD41781 Q9UNF0
BC008037 AAH08037 Q9UNF0
DQ892911 ABM83837  
DQ896161 ABM87160  
AL136845 CAB66779 Q9UNF0
AL389984 CAB97538 Q9UNF0
CR456536 CAG30422 Q9UNF0
CR533523 CAG38554 Q6FIA3
CU013136 CAK54567  
CU013424 CAK54866  

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene Info Protein
H.sapiens PACSIN2 NP_001171899 R.norvegicus Pacsin2 124461   NP_570096 94
M.musculus Pacsin2 23970 Gene Info NP_001152982 94
A.gambiae AgaP_AGAP008046 5668226   XP_001689033 45
D.melanogaster Synd 42467   NP_788697 45
C.elegans sdpn-1 181058   NP_001024664 34

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)