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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. TFF1, Trefoil factor 1
Sequence ID:NM_003225
Entrez Gene ID:7031
Ensembl ID:ENSG00000160182

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:21q22.3Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:21: 43782390 - 43786628

NM_003225 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
172304378239043782603
2313834378336343783515
3845084378651943786643

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
5186922Full LengthBC032811trefoil factor 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_003216  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_003225 NP_003216 P04155 Trefoil

Related Sequences

 
mRNAGenPeptSwissProt
M12075 AAA52402 P04155
BC032811 AAH32811 P04155
X00474 CAA25155 P04155
X52003 CAA36254 P04155

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens TFF1 NP_003216 M.musculus Tff1 21784 Gene Info NP_033388 67
M.musculus Gm3090 100041004   XP_001475747 67
R.norvegicus Tff1 117270   NP_476470 65

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)

BioCarta Pathways
Pathway information courtesy of BioCarta