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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. COPA, coatomer protein complex, subunit alpha
Sequence ID:NM_001098398
NM_004371
Entrez Gene ID:1314
Ensembl ID:ENSG00000122218

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, ear, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, peripheral nervous system, pineal gland, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:1q23.2Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:1: 160259067 - 160263017

 Exon Info From UCSC:
NM_001098398
NM_004371

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
5533230Full LengthBC038447coatomer protein complex, subunit alpha
5285498IncompleteBC037941coatomer protein complex, subunit alpha

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_004362  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001098398 NP_001091868    
NM_004371 NP_004362 P53621 WD40
Coatomer_WDAD
COPI_C

Related Sequences

 
mRNAGenPeptSwissProt
U24105 AAB70879 P53621
BC038447 AAH38447 P53621

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens COPA NP_001091868 M.musculus Copa 12847 Gene Info NP_034068 98
R.norvegicus Copa 304978   NP_001128012 98
D.melanogaster alphaCop 38199   NP_477395 72
A.gambiae AgaP_AGAP010251 1279675   XP_319442 72
C.elegans Y71F9AL.17 171860   NP_491069 61
A.thaliana AT1G62020 842497   NP_176393 57
A.thaliana AT2G21390 816678   NP_179734 57
N.crassa NCU10066 3874028   XP_957881 51
S.pombe SPBPJ4664.04 2541412   NP_595279 49
S.cerevisiae COP1 851410   NP_010136 46

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)

BioCarta Pathways
Pathway information courtesy of BioCarta