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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. HBP1, HMG-box transcription factor 1
Sequence ID:NM_012257
NM_001244262
Entrez Gene ID:26959
Ensembl ID:ENSG00000105856

Database Links

UniGeneEntrez GeneEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, ear, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, peripheral nervous system, pineal gland, placenta, pooled tissue, prostate, retina, skin, soft tissue, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:7q22-q31Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:7: 106820327 - 106842953


Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3914986Full LengthBC017069HMG-box transcription factor 1
4278438Full LengthBC022329HMG-box transcription factor 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_036389  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001244262 NP_001231191    
NM_012257 NP_036389 O60381 HMG_box
AXH

Related Sequences

 
mRNAGenPeptSwissProt
AF019214 AAB71862 O14790
AF182038 AAD56225 O60381
BC017069 AAH17069 O60381
BC022329 AAH22329 O60381
DQ891576 ABM82502  
AK074353 BAB85059 O60381
AK122785 BAG53729 O60381
AK295910 BAG58698 B4DJ36
AK298504 BAG60711 B4DPU9

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens HBP1 NP_036389 M.musculus Hbp1 73389 Gene Info NP_694878 95
R.norvegicus Hbp1 27080   NP_037353 94

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)