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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. KPNA1, karyopherin alpha 1 (importin alpha 5)
Sequence ID:NM_002264
NR_026698
Entrez Gene ID:3836
Ensembl ID:ENSG00000114030

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, ear, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, pineal gland, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, soft tissue, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:3q21Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:3: 122142435 - 122144561

 Exon Info From UCSC:
NM_002264

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
2822859Full LengthBC002374karyopherin alpha 1 (importin alpha 5)
2822859Full LengthBC003009karyopherin alpha 1 (importin alpha 5)
6173605Full LengthBC090864karyopherin alpha 1 (importin alpha 5)

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_002255  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_002264 NP_002255 P52294 Arm
IBB

Related Sequences

 
mRNAGenPeptSwissProt
S75295 AAC60648 P52294
BC002374 AAH02374 P52294
BC003009 AAH03009 P52294
BC090864 AAH90864 Q5BKZ2
BT006959 AAP35605 P52294
DQ891406 ABM82332  
DQ896822 ABM87821  
AK125626 BAG54224 B3KWR2
AK128280 BAG54654 B3KXZ2
AK299030 BAG61106 B3KXZ2
CR456743 CAG33024 P52294

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens KPNA1 NP_002255 M.musculus Kpna1 16646 Gene Info NP_032491 98
R.norvegicus Kpna1 288064   NP_942021 98
A.thaliana MOS6 827472   NP_192124 56
A.thaliana IMPA-6 839517   NP_973743 54

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)