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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. ABR, active BCR-related
Sequence ID:NM_001092
NM_001159746
NM_001256847
NM_021962
NR_046393
RefSeqGene ID:NG_011987
Entrez Gene ID:29
Ensembl ID:ENSG00000159842

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, peripheral nervous system, pineal gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, soft tissue, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Associated Diseases (from OMIM)

DiseaseOther Genes
MEDULLOBLASTOMAAPC
APC
BRCA2
CTNNB1
DMBT1
PTCH1
PTCH2
SUFU

Cytogenetic Location (from UniGene)

Cytogenetic Location:17p13.3Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:17: 906758 - 909057

 Exon Info From UCSC:
NM_001092
NM_001159746
NM_021962

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
100069211Full LengthBC172517active BCR-related gene
5725920IncompleteBC036807active BCR-related gene
100063042BC156483active BCR-related gene

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_001083  NP_068781  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001092 NP_001083   C2
PH
RhoGAP
RhoGEF
NM_001159746 NP_001153218    
NM_001256847 NP_001243776    
NM_021962 NP_068781 Q12979 C2
PH
RhoGAP
RhoGEF

Related Sequences

 
mRNAGenPeptSwissProt
U01147 AAC50063 Q12979
BC156483 AAI56484  
BC172517 AAI72517  
AK126882 BAC86734 Q6ZT60
AK124547 BAG54051 B3KW89
AK295191 BAH12006 B7Z2X0
AK299909 BAH13169 B7Z683
AK300336 BAH13263 B7Z6H7
AK302682 BAH13777 B7Z7Z1

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens ABR NP_068781 M.musculus Abr 109934 Gene Info NP_942598 99
R.norvegicus Abr 287537   NP_001099284 98
A.gambiae AgaP_AGAP000865 1277379   XP_316836 38
D.melanogaster RhoGAP1A 5740235   NP_001096856 37

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)