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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. AMD1, adenosylmethionine decarboxylase 1
Sequence ID:NM_001033059
NM_001634
Entrez Gene ID:262
Ensembl ID:ENSG00000123505

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, ear, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, peripheral nervous system, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:6q21Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:6: 111196020 - 111215518

 Exon Info From UCSC:
NM_001033059
NM_001634

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
2900587Full LengthBC000171adenosylmethionine decarboxylase 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_001625  

Protein Infomation

RefSeq
mRNAProteinSwissProtEnzymePfam
NM_001033059 NP_001028231      
NM_001634 NP_001625 P17707 EC 4.1.1.50 SAM_decarbox

Related Sequences

 
mRNAGenPeptSwissProtEnzyme
M21154 AAA51716 P17707 EC 4.1.1.50
BC000171 AAH00171 P17707 EC 4.1.1.50
DQ894110 ABM85036    
AK300330 BAG62078 A6NNH3  
AK302761 BAG63972 B4DZ60  
AK304351 BAG65194 Q5VXN5  
AK316471 BAH14842 Q5VXN5  
BX640599 CAE45705 Q6N0B2  
AL832698 CAI46113 P17707 EC 4.1.1.50

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens AMD1 NP_001625 M.musculus Amd1 11702 Gene Info NP_033795 98
M.musculus Amd2 100041585 Gene Info NP_031470 98
R.norvegicus Amd1 81640   NP_112273 97
D.melanogaster SamDC 34396   NP_477223 52
A.gambiae AgaP_AGAP009619 1278992   XP_318648 51
N.crassa NCU01083 3877771   XP_961695 45
C.elegans smd-1 173269   NP_493448 43
S.pombe spe2 2541338   NP_596179 43
A.thaliana AT3G25570 822144   NP_001189972 40
A.thaliana SAMDC 821214   NP_001154585 40
A.thaliana CPuORF9 6241331   NP_001078093 40
A.thaliana AT5G15950 831452   NP_001031888 39
S.cerevisiae SPE2 854105   NP_014590 35

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)