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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. CLSTN2, calsyntenin 2
Sequence ID:NM_022131
Entrez Gene ID:64084
Ensembl ID:ENSG00000158258

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:3q23Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:3: 139654206 - 140286632

 Exon Info From UCSC:
NM_022131

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
40008317Full LengthBC103496calsyntenin 2
40008318Full LengthBC104485calsyntenin 2
40008319Full LengthBC103506calsyntenin 2
3938696IncompleteBC004871calsyntenin 2
4130487IncompleteBC007943calsyntenin 2

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_071414  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_022131 NP_071414 Q9H4D0 Cadherin

Related Sequences

 
mRNAGenPeptSwissProt
BC004871 AAH04871 Q9H4D0
BC007943 AAH07943 Q9H4D0
BC103496 AAI03497 Q9H4D0
BC103506 AAI03507 Q9H4D0
BC104485 AAI04486 Q9H4D0
AY753303 AAV30553 Q9H4D0
AK315308 BAG37712 Q9H4D0
AK056411 BAG51700 B3KPI8
AK096432 BAG53289 B3KU27
AK096818 BAG53367 B3KUA5
AJ278018 CAC14924 Q9H4D0

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens CLSTN2 NP_071414 M.musculus Clstn2 64085 Gene Info NP_071714 95
R.norvegicus Clstn2 171394   NP_599204 94
A.gambiae AgaP_AGAP007103 4576322   XP_001688050 38
D.melanogaster cals 43824   NP_726646 36

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)