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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. IPO13, importin 13
Sequence ID:XM_003846624
NM_014652
Entrez Gene ID:9670
Ensembl ID:ENSG00000117408

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, pancreas, pancreatic islet, peripheral nervous system, pineal gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:1p34.1Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:1: 44412610 - 44433693

 Exon Info From UCSC:
NM_014652

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
2985721Full LengthBC008194importin 13
3161848IncompleteBC002608importin 13

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_055467  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_014652 NP_055467 O94829 IBN_N
Xpo1

Related Sequences

 
mRNAGenPeptSwissProt
AF267987 AAF73471 O94829
BC002608 AAH02608 Q6PKD4
BC008194 AAH08194 O94829
JF432433 ADZ15650  
AB018267 BAA34444 O94829
AK023441 BAB14575 O94829
AK290173 BAF82862 A8K2A8
AK091565 BAG52382 Q5T4X2
AL117501 CAB55966 O94829
XM_003846624 XP_003846672  

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens IPO13 NP_055467 M.musculus Ipo13 230673 Gene Info NP_666264 99
R.norvegicus Ipo13 116458   NP_446230 98
D.melanogaster cdm 42171   NP_650682 30
A.gambiae AgaP_AGAP009571 1278932   XP_318583 28
A.thaliana AT1G12930 837851   NP_563920 28
C.elegans T16G12.6 176420   NP_499235 22

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)