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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. SLC18A1, solute carrier family 18 (vesicular monoamine), member 1
Sequence ID:NM_001135691
NM_001142324
NM_001142325
NM_003053
Entrez Gene ID:6570
Ensembl ID:ENSG00000036565

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:8p21.3Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:8: 20003273 - 20040613

 Exon Info From UCSC:
NM_001135691
NM_001142324
NM_001142325
NM_003053

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
4125784Full LengthBC006317solute carrier family 18 (vesicular monoamine), member 1
4127678Full LengthBC009387solute carrier family 18 (vesicular monoamine), member 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_003044  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001135691 NP_001129163    
NM_001142324 NP_001135796    
NM_001142325 NP_001135797    
NM_003053 NP_003044 P54219 MFS_1

Related Sequences

 
mRNAGenPeptSwissProt
U39905 AAC50472 P54219
BC006317 AAH06317 Q9BRE4
BC009387 AAH09387 Q96GL6
DQ892730 ABM83656  
DQ893445 ABM84371  
DQ895976 ABM86902  
AK313720 BAG36463 B2R9B6

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens SLC18A1 NP_001129163 R.norvegicus Slc18a1 25693   NP_037284 84
M.musculus Slc18a1 110877 Gene Info NP_694694 83

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)