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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. PROP1, PROP paired-like homeobox 1
Sequence ID:NM_006261
RefSeqGene ID:NG_015889
Entrez Gene ID:5626
Ensembl ID:ENSG00000175325

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:5q35.3Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:5: 177419235 - 177423243

NM_006261 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
1813177419235177420047
8141046177421106177421338
10471464177422825177423242

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
7216890Full LengthBC069076PROP paired-like homeobox 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_006252  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_006261 NP_006252 O75360 Homeobox

Related Sequences

 
mRNAGenPeptSwissProt
AF076215 AAC77454 O75360
BC069076 AAH69076 O75360

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens PROP1 NP_006252 M.musculus Prop1 19127 Gene Info NP_032962 74
R.norvegicus Prop1 266738   NP_705891 71

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)