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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. SDC3, Syndecan 3
Sequence ID:NM_014654
RefSeqGene ID:NG_013371
Entrez Gene ID:9672
Ensembl ID:ENSG00000162512

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data


Associated Diseases (from OMIM)

DiseaseOther Genes
OBESITYADRB2
ADRB3
AGRP
CARTPT
ENPP1
FTO
GHRL
MC3R
MC4R
NR0B2
POMC
PPARG
PPARGC1B
PYY
SIM1
UCP1
UCP2
UCP3
UCP3

Cytogenetic Location (from UniGene)

Cytogenetic Location:1pter-p22.3

Chromosomal Position (from UCSC)

Chromosomal Position:1: 31345981 - 31381480

NM_014654 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
139123134231231346223
391342043134714331347434
420548183134939831350011
481949363135146931351586
493751213138129531381479

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_055469  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_014654 NP_055469 O75056 Syndecan

Related Sequences

 
mRNAGenPeptSwissProt
AF248634 AAK39969 O75056
DQ891900 ABM82826  
DQ895086 ABM86012  
AB007937 BAA32313 O75056
AK295698 BAG58546 B4DIN4

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens SDC3 NP_055469 R.norvegicus Sdc3 116673   NP_446345 85
M.musculus Sdc3 20970 Gene Info NP_035650 84

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)