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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. ITGA10, integrin, alpha 10
Sequence ID:NM_003637
Entrez Gene ID:8515
Ensembl ID:ENSG00000143127

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:1q21Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:1: 145525049 - 145542601

 Exon Info From UCSC:
NM_003637

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
9021699Full LengthBC140831integrin, alpha 10
9053168Full LengthBC144637integrin, alpha 10
100063944Full LengthBC160008integrin, alpha 10

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_003628  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_003637 NP_003628 O75578 VWA
FG-GAP
Integrin_alpha2

Related Sequences

 
mRNAGenPeptSwissProt
AF074015 AAC31952 O75578
AF112345 AAF21944 O75578
BC140831 AAI40832 B2RTV5
BC144637 AAI44638 B2RTV5
BC160008 AAI60008  
AY358325 AAQ88691 O75578
AK314255 BAG36921 O75578
AK304155 BAG65044 B4E282
AK304183 BAG65063 B4E2A1

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens ITGA10 NP_003628 M.musculus Itga10 213119 Gene Info NP_001074522 88
R.norvegicus Itga10 310683   NP_001101169 87

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)