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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. RAB5B, RAB5B, member RAS oncogene family
Sequence ID:NM_001252036
NM_001252037
NM_002868
Entrez Gene ID:5869
Ensembl ID:ENSG00000111540

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer Aberrations

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, brain, cartilage, cerebellum, cerebrum, cervix, colon, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, peripheral nervous system, placenta, pooled tissue, prostate, retina, skin, soft tissue, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:12q13Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:12: 56385990 - 56388480

Transcript StartTranscript EndChromosomal Start Chromosomal End
2635636786156367922
643185638065256380906
3194705638373056383881
4715935638446556384587
5946875638514356385236
68832855638588056388477

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
5538490Full LengthBC032740RAB5B, member RAS oncogene family
6146668Full LengthBC065298RAB5B, member RAS oncogene family
6151079Full LengthBC056422RAB5B, member RAS oncogene family
6191566Full LengthBC050558RAB5B, member RAS oncogene family
6046989IncompleteBC040143RAB5B, member RAS oncogene family

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_002859  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001252036 NP_001238965    
NM_001252037 NP_001238966    
NM_002868 NP_002859 P61020 Ras

Related Sequences

 
mRNAGenPeptSwissProt
AF267863 AAG44732 Q9H2I5
BC032740 AAH32740 P61020
BC040143 AAH40143 P61020
BC050558 AAH50558 P61020
BC056422 AAH56422 P61020
BC065298 AAH65298 P61020
AF498937 AAM21085 P61020
AK292597 BAF85286 P61020
AK296517 BAG59149 B4DKD7
X54871 CAA38653 P61020
BX537408 CAD97650 P61020
CR536482 CAG38721 Q6FI54
CR541690 CAG46491 P61020
AM393529 CAL38406  

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens RAB5B NP_002859 R.norvegicus Rab5b 288779   NP_001073405 99
S.pombe ypt5 2542248   NP_593907 69
N.crassa NCU00895 3880935   XP_964811 64
S.cerevisiae YPT52 853884   NP_012939 52

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)