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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Hs. CALCOCO1, Calcium binding and coiled-coil domain 1
Sequence ID:NM_020898
NM_001143682
Entrez Gene ID:57658
Ensembl ID:ENSG00000012822

Database Links

UniGeneEntrez GeneEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, peripheral nervous system, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, soft tissue, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:12q13.13Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:12: 54104902 - 54121204

 Exon Info From UCSC:
NM_020898
NM_001143682

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
2957946Full LengthBC003177calcium binding and coiled-coil domain 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_065949  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001143682 NP_001137154    
NM_020898 NP_065949 Q9P1Z2 CALCOCO1

Related Sequences

 
mRNAGenPeptSwissProt
BC003177 AAH03177 Q9P1Z2
AY211909 AAO65163 Q9P1Z2
AF370415 AAQ15251 Q9P1Z2
AY358397 AAQ88763 Q9P1Z2
AY563137 AAT68474 Q9P1Z2
AB040969 BAA96060 Q9P1Z2
AK027881 BAB55428 Q9P1Z2
AK092788 BAG52609 B3KS47
AK122773 BAG53720 Q9P1Z2
AK294424 BAG57671 B4DG60
AK296497 BAG59131 B4DKB9
AL136895 CAB66829 Q9P1Z2
BX538208 CAD98068 Q7Z313
CR533567 CAG38598 Q9P1Z2
AM393253 CAL38131  

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens CALCOCO1 NP_065949 M.musculus Calcoco1 67488 Gene Info NP_080468 89
R.norvegicus Calcoco1 246047   NP_631929 89

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)