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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. PSMC6, proteasome (prosome, macropain) 26S subunit, ATPase, 6
Sequence ID:NM_002806
Entrez Gene ID:5706
Ensembl ID:ENSG00000100519

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, peripheral nervous system, pituitary gland, placenta, pooled tissue, prostate, salivary gland, skin, soft tissue, spleen, stem cell, stomach, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:14q22.1Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:14: 53173931 - 53194710

 Exon Info From UCSC:
NM_002806

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3996906Full LengthBC005390proteasome (prosome, macropain) 26S subunit, ATPase, 6

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_002797  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_002806 NP_002797 P62333 AAA

Related Sequences

 
mRNAGenPeptSwissProt
AF006305 AAB61616 P62333
BC005390 AAH05390 P62333
BT006843 AAP35489 P62333
DQ893704 ABM84630  
D78275 BAA11338 P62333
AK313670 BAG36422 P62333
AK299155 BAG61203 B4DR91
CR456709 CAG32990 P62333

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens PSMC6 NP_002797 M.musculus Psmc6 67089 Gene Info NP_080235 100
R.norvegicus Psmc6 289990   NP_001093979 100
A.gambiae AgaP_AGAP001407 1281769   XP_321726 90
D.melanogaster Rpt4 31567   NP_572308 89
C.elegans rpt-4 173384   NP_001022114 82
A.thaliana RPT4A 834316   NP_199115 77
A.thaliana AT1G45000 841065   NP_175120 77
N.crassa NCU07367 3875020   XP_958860 75
S.pombe rpt4 2539189   NP_587809 74
P.falciparum PF13_0033 814012   XP_001349791 70
S.cerevisiae RPT4 854433   NP_014902 68

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)