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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. RTN4IP1, Reticulon 4 interacting protein 1
Sequence ID:NM_032730
Entrez Gene ID:84816
Ensembl ID:ENSG00000130347

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:6q21Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:6: 107019880 - 107076896

NM_032730 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
31076107018904107019977
10771169107031202107031294
11701353107035553107035736
13541490107040038107040174
14911539107050748107050796
15401664107067076107067200
16651733107069299107069367
17341885107070692107070843
18862636107076622107077372

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
4309263Full LengthBC006399reticulon 4 interacting protein 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_116119  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_032730 NP_116119 Q8WWV3 ADH_zinc_N
ADH_N

Related Sequences

 
mRNAGenPeptSwissProt
BC006399 AAH06399 Q8WWV3
AF336861 AAK64603 Q96RL8
AF439711 AAL34525 Q8WWV3
AY063761 AAL40856 Q8WWV3
DQ893145 ABM84071  
DQ896438 ABM87437  
AK095207 BAC04499 Q8WWV3
AK313962 BAG36678 B2R9Y1

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens RTN4IP1 NP_116119 R.norvegicus Rtn4ip1 309912   NP_001101114 91
M.musculus Rtn4ip1 170728 Gene Info NP_570962 90
A.gambiae AgaP_AGAP009178 1280134   XP_319942 40
D.melanogaster CG17221 33521   NP_608746 38
C.elegans F56H1.6 3565366   NP_001021512 37
A.thaliana AT3G15090 820739   NP_188127 37

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)