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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. FOXA2, forkhead box A2
Sequence ID:NM_021784
NM_153675
Entrez Gene ID:3170
Ensembl ID:ENSG00000125798

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:20p11Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:20: 22562113 - 22566093

 Exon Info From UCSC:
NM_021784
NM_153675

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3940139Full LengthBC011780forkhead box A2
2821244IncompleteBC006545forkhead box A2
2821244IncompleteBC019288forkhead box A2

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_068556  NP_710141  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_021784 NP_068556 Q9Y261 Fork_head
Fork_head_N
NM_153675 NP_710141 Q9Y261 Fork_head
Fork_head_N

Related Sequences

 
mRNAGenPeptSwissProt
BC006545 AAH06545 Q9Y261
BC011780 AAH11780 Q9Y261
BC019288 AAH19288 Q9Y261
DQ892883 ABM83809  
DQ896132 ABM87131  
AB028021 BAA78106 Q9Y261
AK301611 BAG63097 B4DWN5

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens FOXA2 NP_068556 M.musculus Foxa2 15376 Gene Info NP_034576 98
R.norvegicus Foxa2 25099   NP_036875 96
D.melanogaster fkh 43383   NP_001163762 48
A.gambiae AgaP_AGAP001671 1281503   XP_321425 47

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)