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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. PAX2, paired box 2
Sequence ID:NM_000278
NM_003987
NM_003988
NM_003989
NM_003990
RefSeqGene ID:NG_008680
Entrez Gene ID:5076
Ensembl ID:ENSG00000075891

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data


Associated Diseases (from OMIM)

DiseaseOther Genes
OPTIC NERVE COLOBOMA WITH RENAL DISEASE 

Cytogenetic Location (from UniGene)

Cytogenetic Location:10q24Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:10: 102508608 - 102584421

 Exon Info From UCSC:
NM_000278
NM_003987
NM_003988
NM_003989
NM_003990

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
100015741Full LengthBC148710paired box 2
100014752BC141452paired box 2

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_003979  NP_000269  NP_003980  NP_003978  NP_003981  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_000278 NP_000269   PAX
NM_003987 NP_003978   PAX
NM_003988 NP_003979   PAX
NM_003989 NP_003980   PAX
NM_003990 NP_003981   PAX

Related Sequences

 
mRNAGenPeptSwissProt
L25597 AAA36417 Q02962
M89470 AAA60024 Q02962
BC141452 AAI41453  
BC148710 AAI48711  
AY153483 AAN77899 Q6YFJ8
AY153484 AAN77900 Q6YFJ7

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens PAX2 NP_003978 R.norvegicus Pax2 293992   NP_001099831 100
M.musculus Pax2 18504 Gene Info NP_035167 99
D.melanogaster sv 43825   NP_001162834 49

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)