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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. CDX1, Caudal type homeobox 1
Sequence ID:NM_001804
Entrez Gene ID:1044
Ensembl ID:ENSG00000113722

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:5q32Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:5: 149546358 - 149563306

NM_001804 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
1541149546343149546883
542687149562330149562475
6881771149563036149564119

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
40005955Full LengthBC096252caudal type homeobox 1
40005957Full LengthBC127122caudal type homeobox 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_001795  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001804 NP_001795 P47902 Homeobox
Caudal_act

Related Sequences

 
mRNAGenPeptSwissProt
U51095 AAB40602 P47902
U15212 AAC50237 P47902
AF239666 AAF61234 P47902
BC096249 AAH96249 Q14DX0
BC096250 AAH96250 Q4VAU5
BC096251 AAH96251 P47902
BC096252 AAH96252 Q4VAU3
BC127122 AAI27123 Q4VAU3

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens CDX1 NP_001795 M.musculus Cdx1 12590 Gene Info NP_034010 86
R.norvegicus Cdx1 364883   XP_344692 83

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)