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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. SS18L1, synovial sarcoma translocation gene on chromosome 18-like 1
Sequence ID:NM_015558
NM_198935
Entrez Gene ID:26039
Ensembl ID:ENSG00000184402

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:20q13.3Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:20: 60718850 - 60757540


Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
4823298Full LengthBC034494synovial sarcoma translocation gene on chromosome 18-like 1
5094932Full LengthBC068993synovial sarcoma translocation gene on chromosome 18-like 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_945173  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_198935 NP_945173 O75177 SSXT

Related Sequences

 
mRNAGenPeptSwissProt
BC034494 AAH34494 O75177
BC068993 AAH68993 O75177
AY203931 AAP34454 O75177
DQ890908 ABM81834  
EU176499 ABW03300  
AB014593 BAA31668 O75177
AK291485 BAF84174 O75177
AK125656 BAG54230 O75177
AK299881 BAG61729 B4DSR7
BX640848 CAE45918 O75177

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens SS18L1 NP_945173 M.musculus Ss18l1 269397 Gene Info NP_848865 91
R.norvegicus Ss18l1 192352   NP_620273 86

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)