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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. LBP, lipopolysaccharide binding protein
Sequence ID:NM_004139
Entrez Gene ID:3929
Ensembl ID:ENSG00000129988

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:20q11.23Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:20: 36974902 - 37005311

 Exon Info From UCSC:
NM_004139

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
4767724Full LengthBC022256lipopolysaccharide binding protein

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_004130  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_004139 NP_004130 P18428 LBP_BPI_CETP
LBP_BPI_CETP_C

Related Sequences

 
mRNAGenPeptSwissProt
M35533 AAA59493 P18428
AF105067 AAD21962 P18428
BC022256 AAH22256 Q8TCF0
AY344471 AAR03787  
DQ891394 ABM82320  
DQ894434 ABM85360  
AK313625 BAG36385 P18428

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens LBP NP_004130 R.norvegicus Lbp 29469   NP_058904 69
M.musculus Lbp 16803 Gene Info NP_032515 68
A.thaliana AT3G20270 821571   NP_001189939 24
A.thaliana AT1G04970 839357   NP_563724 24

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)

BioCarta Pathways
Pathway information courtesy of BioCarta