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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Hs. RRP9, ribosomal RNA processing 9, small subunit (SSU) processome component, homolog (yeast)
Sequence ID:NM_004704
Entrez Gene ID:9136
Ensembl ID:ENSG00000114767

Database Links

UniGeneEntrez GeneEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:3p21.2Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:3: 51967468 - 51975910

 Exon Info From UCSC:
NM_004704

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3050186Full LengthBC001113ribosomal RNA processing 9, small subunit (SSU) processome component, homolog (yeast)
3832948Full LengthBC010048ribosomal RNA processing 9, small subunit (SSU) processome component, homolog (yeast)
3954043Full LengthBC009879ribosomal RNA processing 9, small subunit (SSU) processome component, homolog (yeast)
4898690Full LengthBC023662ribosomal RNA processing 9, small subunit (SSU) processome component, homolog (yeast)

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_004695  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_004704 NP_004695 O43818 WD40

Related Sequences

 
mRNAGenPeptSwissProt
BC001113 AAH01113 O43818
BC009879 AAH09879 O43818
BC010048 AAH10048 O43818
BC023662 AAH23662 O43818
DQ895802 ABM86728  
EU176364 ABW03815  
AK313696 BAG36443 O43818
AJ001340 CAA04687 O43818

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens RRP9 NP_004695 M.musculus Rrp9 27966 Gene Info NP_663595 93
R.norvegicus Rrp9 363134   NP_001102248 93
D.melanogaster U3-55K 3346176   NP_001014529 43
S.pombe SPAC2E1P5.05 2541476   NP_594143 41
A.gambiae AgaP_AGAP005320 1276034   XP_315334 40
A.thaliana EMB2271 827861   NP_193845 39
A.thaliana YAO 825889   NP_192450 39
C.elegans T02H6.1 173461   NP_872030 39
N.crassa NCU01367 3876866   XP_960719 39
S.cerevisiae RRP9 856255   NP_015463 36

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)