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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. LY75, lymphocyte antigen 75
Sequence ID:NM_002349
Entrez Gene ID:4065
Ensembl ID:ENSG00000054219

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cartilage, cerebrum, cervix, colon, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, peripheral nervous system, pineal gland, placenta, pooled tissue, prostate, skin, soft tissue, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:2q24Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:2: 160659869 - 160738734

 Exon Info From UCSC:
NM_002349

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
100068959BC172265lymphocyte antigen 75

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_002340  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001198759 NP_001185688    
NM_001198760 NP_001185689    
NM_001198763 NP_001185692    
NM_001198764 NP_001185693    
NM_002349 NP_002340 O60449 fn2
Lectin_C
NM_014880 NP_055695 Q8IX05 Lectin_C

Related Sequences

 
mRNAGenPeptSwissProt
AF011333 AAC17636 O60449
AF064827 AAC62622 O60449
BC020646 AAH20646 Q8IX05
BC172265 AAI72265 O60449
AF499000 AAN77050 Q8IX05
AY184222 AAN85434 O60449
AY314006 AAP79899 O60449
AY314007 AAP79900 Q8IX05
D14664 BAA03498 Q8IX05
AB208915 BAD92152 Q59H44
AK291279 BAF83968 Q8IX05
AK304422 BAG65251 Q8IX05

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens LY75 NP_002340 M.musculus Ly75 17076 Gene Info NP_038853 77
R.norvegicus Ly75 499800   XP_575139 77

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)