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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. TOM1L1, Target of myb1 (chicken)-like 1
Sequence ID:NM_005486
Entrez Gene ID:10040
Ensembl ID:ENSG00000141198

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, ear, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, peripheral nervous system, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, spleen, stem cell, stomach, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:17q23.2Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:17: 53014731 - 53015394

 Exon Info From UCSC:
NM_005486

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
4612157Full LengthBC029396target of myb1 (chicken)-like 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_005477  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_005486 NP_005477 O75674 VHS
GAT

Related Sequences

 
mRNAGenPeptSwissProt
BC029396 AAH29396 Q8N749
AB065085 BAB93522 Q8NI65
AK223125 BAD96845 O75674
AK315039 BAG37522 O75674
AK300823 BAG62477 B4DUW5
AK303912 BAG64841 B4E1M9
AK303913 BAG64842 B4E1N0
AK315907 BAH14278 B7Z9E2
AJ010071 CAA08993 O75674

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens TOM1L1 NP_005477 R.norvegicus RGD1562626 287622   XP_002727836 82
M.musculus Tom1l1 71943 Gene Info NP_082287 79

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)