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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Hs. PLOD3, procollagen-lysine, 2-oxoglutarate 5-dioxygenase 3
Sequence ID:NM_001084
RefSeqGene ID:NG_012148
Entrez Gene ID:8985
Ensembl ID:ENSG00000106397

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, peripheral nervous system, pituitary gland, placenta, pooled tissue, prostate, salivary gland, skin, soft tissue, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:7q22Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:7: 100849259 - 100860770

 Exon Info From UCSC:
NM_001084

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
4300048Full LengthBC011674procollagen-lysine, 2-oxoglutarate 5-dioxygenase 3

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_001075  

Protein Infomation

RefSeq
mRNAProteinSwissProtEnzymePfam
NM_001084 NP_001075 O60568 EC 1.14.11.4 2OG-FeII_Oxy

Related Sequences

 
mRNAGenPeptSwissProtEnzyme
AF068229 AAC34808 O60568 EC 1.14.11.4
AF046889 AAC39753 O60568 EC 1.14.11.4
BC011674 AAH11674 O60568 EC 1.14.11.4
AY220458 AAO61775 O60568 EC 1.14.11.4
AK312743 BAG35613 O60568 EC 1.14.11.4
AK075338 BAG52115 B3KQQ3  
AK297559 BAG59952 B4DMP0  
AK298537 BAG60737 B4DPX5  
AL049952 CAB43221 Q9UG85  

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens PLOD3 NP_001075 M.musculus Plod3 26433 Gene Info NP_036092 92
R.norvegicus Plod3 288583   NP_835202 91
A.gambiae AgaP_AGAP001507 1281666   XP_321614 48
C.elegans let-268 174564   NP_496170 48
D.melanogaster CG6199 39265   NP_648451 47

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)