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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Hs. PSMD6, Proteasome (prosome, macropain) 26S subunit, non-ATPase, 6
Sequence ID:NM_014814
Entrez Gene ID:9861
Ensembl ID:ENSG00000163636

Database Links

UniGeneEntrez GeneEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, ear, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, peripheral nervous system, placenta, pooled tissue, prostate, retina, salivary gland, skin, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:3p14.1Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:3: 63996230 - 64009149

NM_014814 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
12106399623063996439
2112886399655363996630
2894576399911463999282
4585666400427464004382
5677866400449364004712
7879326400497164005116
93311386400799364008198
113913086400895064009119

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
2900971Full LengthBC000904proteasome (prosome, macropain) 26S subunit, non-ATPase, 6
3344973Full LengthBC000630proteasome (prosome, macropain) 26S subunit, non-ATPase, 6
3858094Full LengthBC012369proteasome (prosome, macropain) 26S subunit, non-ATPase, 6

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_055629  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001271779 NP_001258708    
NM_001271780 NP_001258709    
NM_001271781 NP_001258710    
NM_014814 NP_055629 Q15008 PCI

Related Sequences

 
mRNAGenPeptSwissProt
AF215935 AAF65540 Q15008
BC000630 AAH00630 Q15008
BC000904 AAH00904 Q15008
BC012369 AAH12369 Q15008
AF530062 AAQ09946 Q15008
AY359879 AAQ63402 Q6UV22
AY568086 AAS68366 Q15008
D14663 BAA03497 Q15008
AK290205 BAF82894 Q15008
AK095059 BAG52978 B3KT66

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens PSMD6 NP_055629 M.musculus Psmd6 66413 Gene Info NP_079826 98
R.norvegicus Psmd6 289924   NP_942025 98
A.gambiae AgaP_AGAP002061 1281052   XP_320986 70
D.melanogaster Rpn7 42641   NP_651048 70
A.thaliana AT4G24820 828585   NP_974611 55
C.elegans rpn-7 177753   NP_501632 49
S.pombe rpn7 2540794   NP_595175 46
N.crassa NCU03972 3873733   XP_957611 44
S.cerevisiae RPN7 856223   NP_015433 40

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)