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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. IFFO1, intermediate filament family orphan 1
Sequence ID:NM_001039670
NM_001193457
NM_080730
NR_036467
NM_001193459
NM_015438
NM_080731
Entrez Gene ID:25900
Ensembl ID:ENSG00000010295

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssemblies

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:12p13.3Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:12: 6648693 - 6664894

 Exon Info From UCSC:
NM_001039670
NM_001193457
NM_080730
NM_001193459
NM_080731

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
5183989Full LengthBC110387intermediate filament family orphan 1
3501825IncompleteBC001790hypothetical protein LOC25900, isoform 3
3508474IncompleteBC010431intermediate filament family orphan
3616057IncompleteBC004384intermediate filament family orphan 1
3636594IncompleteBC002857intermediate filament family orphan 1
4896463IncompleteBC023664hypothetical protein LOC25900, isoform 3

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_542768  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001039670 NP_001034759    
NM_001193457 NP_001180386    
NM_080730 NP_542768   Filament

Related Sequences

 
mRNAGenPeptSwissProt
BC002857 AAH02857 Q0D2I5
BC004384 AAH04384 Q0D2I5
BC063004 AAH63004 Q6P593
BC071170 AAH71170 Q0D2I5
BC103817 AAI03818 Q0D2I5
BC103818 AAI03819 Q0D2I5
BC110387 AAI10388 Q0D2I5
BC113848 AAI13849 Q0D2I5
BC114454 AAI14455 Q0D2I5
HQ447920 ADQ32404  
AK000710 BAA91335 Q9NWP4
AK095106 BAG52986 B3KT74
AK298905 BAG61013 B4DQQ1
AL080214 CAB45778 Q9Y4M3
BX648701 CAH56164 Q63HK6
BX648743 CAH56183 Q63HK6

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens IFFO1 NP_542768 M.musculus Iffo1 320678 Gene Info NP_001034758 95
R.norvegicus Iffo1 362437   NP_001102117 94

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)